Just noticed this, and thought I'd mention it as I can't see it mentioned anywhere yet:
Have a look at:
Matchboard > Sort matches by order in segment
So, now everyone should be happy (for the time being)
Has this been documented somewhere?
Now, there is only a kind of customized sorting (e.g. fuzzies and terms first, then MT) and coloring missing.
I don't think it has been documented yet, looks like a secret gift from Igor.